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Final League Tables 2008-09
Premier Division
| team | pld | w | d | l | f | a | pts |
| Dagenham & Redbridge | 22 | 17 | 3 | 2 | 66 | 21 | 54 |
| Chelmsford City | 22 | 12 | 4 | 6 | 50 | 40 | 40 |
| Bedford | 22 | 11 | 6 | 5 | 53 | 29 | 39 |
| Haringey Borough | 22 | 12 | 1 | 9 | 63 | 46 | 37 |
| Hethersett Athletic | 22 | 11 | 2 | 9 | 47 | 33 | 35 |
| Peterborough | 22 | 11 | 0 | 11 | 46 | 36 | 33 |
| Woodbridge Town | 22 | 10 | 2 | 10 | 42 | 43 | 32 |
| Stevenage Borough | 22 | 8 | 6 | 8 | 38 | 46 | 30 |
| Barking | 22 | 8 | 5 | 9 | 41 | 28 | 29 |
| Cambridge University | 22 | 4 | 2 | 12 | 41 | 65 | 26 |
| Cambridge United | 22 | 4 | 2 | 16 | 24 | 82 | 14 |
| Kettering Town | 22 | 3 | 1 | 18 | 23 | 65 | 10 |
Division One North
| team | pld | w | d | l | f | a | pts |
| West Lynn | 20 | 16 | 2 | 2 | 71 | 28 | 50 |
| Taverham | 20 | 13 | 3 | 4 | 56 | 29 | 42 |
| Haverhill Rovers | 20 | 12 | 5 | 3 | 48 | 25 | 41 |
| Cambridge Rangers | 20 | 13 | 1 | 6 | 61 | 35 | 40 |
| Ipswich Wanderers | 20 | 11 | 3 | 6 | 55 | 37 | 36 |
| Histon Hornets | 20 | 9 | 2 | 9 | 35 | 40 | 29 |
| Lakenheath | 20 | 5 | 3 | 12 | 22 | 50 | 18 |
| Cambridge City Reserves | 20 | 6 | 2 | 12 | 43 | 50 | 17 |
| Swanton United | 20 | 4 | 2 | 14 | 32 | 57 | 14 |
| Huntingdon Town | 20 | 4 | 2 | 14 | 35 | 70 | 14 |
| Wymondham Town | 20 | 4 | 1 | 15 | 13 | 50 | 13 |
Division One South
| team | pld | w | d | l | f | a | pts |
| Braintree Town | 18 | 15 | 3 | 0 | 77 | 6 | 48 |
| Billericay Town | 18 | 14 | 2 | 2 | 68 | 19 | 44 |
| Brentwood Town | 18 | 10 | 3 | 5 | 65 | 20 | 33 |
| Arlesey Town | 18 | 9 | 5 | 4 | 50 | 18 | 32 |
| Royston Town | 18 | 8 | 2 | 8 | 33 | 39 | 26 |
| Sawbridgeworth Town | 18 | 7 | 2 | 9 | 24 | 33 | 23 |
| Leighton Linslade | 18 | 6 | 3 | 9 | 38 | 53 | 21 |
| AFC Kempston Rovers | 18 | 5 | 3 | 10 | 24 | 39 | 18 |
| Hoddesdon Owls | 18 | 1 | 3 | 14 | 15 | 86 | 6 |
| Sharnbrook | 18 | 1 | 2 | 15 | 16 | 97 | 5 |